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Vaughn S Cooper

Rampant prophage movement among transient competitors drives rapid adaptation during infection
Experimental evolution to identify undescribed mechanisms of resistance to a novel cationic peptide antibiotic
Host adaptations in the fixLJ pathway of the Burkholderia cepacia complex increase virulence
Parallel evolution of tobramycin resistance across species and environments
The roles of history, chance, and natural selection in the evolution of antibiotic resistance
A method of processing nasopharyngeal swabs to enable multiple testing
Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle
Pseudomonas aeruginosa interstrain dynamics and selection of hyperbiofilm mutants during a chronic infection
Improved detection of culprit pathogens by bacterial DNA sequencing affects antibiotic management decisions in severe pneumonia
Parallel genetic adaptation across environments differing in mode of growth or resource availability
Phylogenomics of colistin-susceptible and resistant XDR Acinetobacter baumannii

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